SyllabusResourcesDataInstructorsGitHub ↗

University of Bologna · MSc Bioinformatics · 2026

Molecular
Phylogenetics

16 lectures · Theory & practicals · Curated by Giobbe Forni

View SyllabusResourcesGitHub ↗
Course Syllabus
CodeLectureMaterial
Week 1
W1_L01Intro to the course & software installationslides·practicals·replay
W1_L02Phylogenetics 101 — Part Aslides·practicals·replay
W1_L03Phylogenetics 101 — Part Bslides·practicals·replay
Week 2
W2_L04Orthology inference and taxon samplingslides·practicals·replay
W2_L05Sequence alignment and filteringslides·practicals·replay
W2_L06Distance-based vs character-based algorithmsslides·practicals·replay
Week 3
W3_L07MK models of molecular evolutionslides·practicals·replay
W3_L08Maximum Likelihood (ML)slides·practicals·replay
W3_L09Bayesian Inference (BI)slides·practicals·replay
Week 4
W4_L10Support metricsslides·practicals·replay
Week 6
W6_L11Complex substitution modelsslides·practicals·replay
W6_L12Discordance, ILS & the coalescentslides·practicals·replay
Week 7
W7_L13Stochastic and systematic biasslides·practicals·replay
W7_L14Divergence times analysesslides·practicals·replay
Week 8
W8_L15Inferring selectionslides·practicals·replay
W8_L16Modelling trait evolution on phylogeniesslides·practicals·replay
Other Important Stuff
📋Available

Exam Sample

Representative exam questions and expected answer format.

→ Open
🎬Coming soon

Lecture Recordings

Video recordings of all lectures. Available after each session.

📦Coming soon

All Slides (Pack)

Download all lecture slides as a single archive.

Course Data

Course datasets including OrthoFinder results, example alignments, trees, and more. Clone the repository to access all data files locally.

git clone https://github.com/for-giobbe/MP26.git
📁OrthoFinder resultsdata/OrthoFinder/
📁Example alignmentsdata/example_alignements/
📁Example treesdata/example_trees/
📁Example datingdata/example_dating/
📁Example selectiondata/example_selection/
📁Proteomesdata/proteoms/
Instructors
GF

Giobbe Forni

Course Curator

giobbe.forni2@unibo.it
JM

Jacopo Martelossi

Contributor

AL

Andrea Luchetti

Contributor